{ "_id": "6a1f17feb401979e7341ec18", "Type": "Package", "Package": "ebTobit", "Title": "Empirical Bayesian Tobit Matrix Estimation", "Version": "1.0.2", "Date": "2024-05-03", "Authors@R": "c(\nperson(\"Alton\", \"Barbehenn\", , \"altonbarbehenn@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0009-0000-3364-7204\")),\nperson(\"Sihai Dave\", \"Zhao\", , \"sdzhao@illinois.edu\", role = \"aut\")\n)", "Description": "Estimation tools for multidimensional Gaussian means using\nempirical Bayesian g-modeling. Methods are able to handle fully\nobserved data as well as left-, right-, and interval-censored\nobservations (Tobit likelihood); descriptions of these methods\ncan be found in Barbehenn and Zhao (2023)\n. Additional, lower-level\nfunctionality based on Kiefer and Wolfowitz (1956)\n and Jiang and Zhang (2009)\n is provided that can be used to\naccelerate many empirical Bayes and nonparametric maximum\nlikelihood problems.", "License": "GPL-3", "URL": "https://github.com/barbehenna/ebTobit", "BugReports": "https://github.com/barbehenna/ebTobit/issues", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.2.3", "Config/pak/sysreqs": "make", "Repository": "https://barbehenna.r-universe.dev", "Date/Publication": "2024-05-03 22:39:54 UTC", "RemoteUrl": "https://github.com/barbehenna/ebtobit", "RemoteRef": "HEAD", "RemoteSha": "f5544ad261119d4a87476031a5d9b9c06d206e8b", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-17 05:49:25 UTC", "User": "root" }, "Author": "Alton Barbehenn [aut, cre] (ORCID:\n),\nSihai Dave Zhao [aut]", "Maintainer": "Alton Barbehenn ", "MD5sum": "4f772d4d7a5dc3f800c7aa6e43793547", "_user": "barbehenna", "_type": "src", "_file": "ebTobit_1.0.2.tar.gz", "_fileid": "087b14009defa79e6ce9ba07a8cef056f4c1e840542284eba1b5811bfc7e4899", "_filesize": 197833, "_sha256": "087b14009defa79e6ce9ba07a8cef056f4c1e840542284eba1b5811bfc7e4899", "_created": "2026-05-17T05:49:25.000Z", "_published": "2026-06-02T17:50:54.518Z", "_distro": "noble", "_jobs": [ { "job": 79136205574, "time": 164, "config": "linux-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "7039766946" }, { "job": 79136205316, "time": 126, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7039762710" }, { "job": 79136205801, "time": 125, "config": "linux-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7039762505" }, { "job": 79136205605, "time": 137, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7039763885" }, { "job": 79136205684, "time": 140, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7039761405" }, { "job": 79136205286, "time": 266, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "7039775390" }, { "job": 79136205643, "time": 142, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7039762008" }, { "job": 79136205800, "time": 250, "config": "macos-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7039772036" }, { "job": 79136204780, "time": 202, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7039748144" }, { "job": 79136204617, "time": 104, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7365613306" }, { "job": 79136205134, "time": 169, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7039767475" }, { "job": 79136205431, "time": 149, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7039765269" }, { "job": 79136205833, "time": 99, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7039759632" } ], "_buildurl": "https://github.com/r-universe/barbehenna/actions/runs/25982718610", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/barbehenna/ebtobit", "_commit": { "id": "f5544ad261119d4a87476031a5d9b9c06d206e8b", "author": "Alton Barbehenn ", "committer": "Alton Barbehenn ", "message": "version bump and small cleaning\n", "time": 1714775994 }, "_maintainer": { "name": "Alton Barbehenn", "email": "altonbarbehenn@gmail.com", "login": "barbehenna", "description": "", "uuid": 17125483 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.3.0", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppArmadillo", "role": "LinkingTo" }, { "package": "RcppParallel", "role": "LinkingTo" }, { "package": "Rcpp", "version": ">= 1.0.10", "role": "Imports" }, { "package": "RcppParallel", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "REBayes", "role": "Suggests" } ], "_owner": "barbehenna", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 1, "_contributors": [ { "user": "barbehenna", "count": 42, "uuid": 17125483 } ], "_userbio": { "uuid": 17125483, "type": "user", "name": "Alton Barbehenn" }, "_downloads": { "count": 191, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ebTobit" }, "_devurl": "https://github.com/barbehenna/ebtobit", "_searchresults": 4, "_topics": [ "openblas", "cpp", "openmp" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/ebTobit.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/barbehenna/ebtobit", "_realowner": "barbehenna", "_cranurl": true, "_releases": [ { "version": "1.0.1", "date": "2023-06-15" }, { "version": "1.0.2", "date": "2024-05-03" } ], "_exports": [ "ConvexDual", "ConvexPrimal", "ebTobit", "EM", "is.ebTobit", "lik_GaussianPIC", "likMat", "new_ebTobit", "posterior_L1mediod.ebTobit", "posterior_mean.ebTobit", "posterior_mode.ebTobit", "tobit_sd", "tobit_sd_mle" ], "_datasets": [ { "name": "BileAcid", "title": "Bile Acid Data", "object": "BileAcid", "class": [ "data.frame" ], "fields": [ "BA_1", "BA_2", "BA_3", "BA_4", "BA_5", "BA_6", "BA_7", "BA_8", "BA_9", "BA_10", "BA_11", "BA_12", "BA_13", "BA_14", "BA_15", "BA_16", "BA_17", "BA_18", "BA_19", "BA_20", "BA_21", "BA_22", "BA_23", "BA_24", "BA_25", "BA_26", "BA_27", "BA_28", "BA_29", "BA_30", "BA_31", "BA_32", "BA_33", "BA_34" ], "rows": 198, "table": true, "tojson": true } ], "_help": [ { "page": "BileAcid", "title": "Bile Acid Data", "topics": [ "BileAcid" ] }, { "page": "ConvexDual", "title": "Convex Optimization of the Kiefer-Wolfowitz NPMLE", "topics": [ "ConvexDual" ] }, { "page": "ConvexPrimal", "title": "Convex Optimization of the Kiefer-Wolfowitz NPMLE", "topics": [ "ConvexPrimal" ] }, { "page": "ebTobit", "title": "Empirical Bayes Matrix Estimation under a Tobit Likelihood", "topics": [ "ebTobit" ] }, { "page": "EM", "title": "Nonparametric Maximum Likelihood via Expectation Maximization", "topics": [ "EM" ] }, { "page": "fitted.ebTobit", "title": "Fitted Estimates of an ebTobit object", "topics": [ "fitted.ebTobit" ] }, { "page": "is.ebTobit", "title": "Validate ebTobit Object", "topics": [ "is.ebTobit" ] }, { "page": "lik_GaussianPIC", "title": "Helper Function - generate likelihood for pair (L,R) and mean gr", "topics": [ "lik_GaussianPIC" ] }, { "page": "likMat", "title": "Helper Function - generate likelihood matrix", "topics": [ "likMat" ] }, { "page": "logLik.ebTobit", "title": "Marginal Log-likelihood of an ebTobit object", "topics": [ "logLik.ebTobit" ] }, { "page": "new_ebTobit", "title": "Create a new ebTobit object", "topics": [ "new_ebTobit" ] }, { "page": "posterior_L1mediod.ebTobit", "title": "Compute the Posterior L1 Mediod of an ebTobit object", "topics": [ "posterior_L1mediod.ebTobit" ] }, { "page": "posterior_mean.ebTobit", "title": "Compute Posterior Mean of an ebTobit object", "topics": [ "posterior_mean.ebTobit" ] }, { "page": "posterior_mode.ebTobit", "title": "Compute Posterior Mode of an ebTobit object", "topics": [ "posterior_mode.ebTobit" ] }, { "page": "predict.ebTobit", "title": "Fitted Estimates of an ebTobit object", "topics": [ "predict.ebTobit" ] }, { "page": "tobit_sd", "title": "Fit Tobit Standard Deviation via Maximum Likelihood", "topics": [ "tobit_sd" ] }, { "page": "tobit_sd_mle", "title": "Maximum Likelihood Estimator for a Single Standard Deviation Parameter", "topics": [ "tobit_sd_mle" ] } ], "_readme": "https://github.com/barbehenna/ebtobit/raw/HEAD/README.md", "_rundeps": [ "Rcpp", "RcppArmadillo", "RcppParallel" ], "_sysdeps": [ { "shlib": "libblas", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.26+ds-1ubuntu0.1", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" }, { "shlib": "libgomp", "package": "libgomp1", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "openmp", "homepage": "http://gcc.gnu.org/", "description": "GCC OpenMP (GOMP) support library" } ], "_score": 2.6989700043360187, "_indexed": true, "_nocasepkg": "ebtobit", "_universes": [ "barbehenna" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.2", "date": "2026-05-17T05:52:11.000Z", "distro": "noble", "arch": "aarch64", "commit": "f5544ad261119d4a87476031a5d9b9c06d206e8b", "fileid": "848f5a78038103c0df25911bccd7ac757f9ad5aa5f90068298789857e6005950", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/barbehenna/actions/runs/25982718610" }, { "r": "4.7.0", "os": "linux", "version": "1.0.2", "date": "2026-05-17T05:51:38.000Z", "distro": "noble", "arch": "x86_64", "commit": "f5544ad261119d4a87476031a5d9b9c06d206e8b", "fileid": "a7d3bf873bb91655d58837a0850b78160ca5778c4e9d8acdd5c018996615217c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/barbehenna/actions/runs/25982718610" }, { "r": "4.6.0", "os": "linux", "version": "1.0.2", "date": "2026-05-17T05:51:40.000Z", "distro": "noble", "arch": "aarch64", "commit": "f5544ad261119d4a87476031a5d9b9c06d206e8b", "fileid": "55faa0a8864170a18aa106f0b742956a0bcb14c8e953543ef1aee448cfe44dd8", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/barbehenna/actions/runs/25982718610" }, { "r": "4.6.0", "os": "linux", "version": "1.0.2", "date": "2026-05-17T05:51:49.000Z", "distro": "noble", "arch": "x86_64", "commit": "f5544ad261119d4a87476031a5d9b9c06d206e8b", "fileid": "71cb07da3a9b3ad410fefa3a337c503d0f9501b68d95d48b0b6be3fcc76ae928", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/barbehenna/actions/runs/25982718610" }, { "r": "4.5.3", "os": "mac", "version": "1.0.2", "date": "2026-05-17T05:51:35.000Z", "arch": "aarch64", "commit": "f5544ad261119d4a87476031a5d9b9c06d206e8b", "fileid": "96fbdb72e951da3d55ef5a7076bef526ad19bba2a179f7fcfe7429ae444478db", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/barbehenna/actions/runs/25982718610" }, { "r": "4.5.3", "os": "mac", "version": "1.0.2", "date": "2026-05-17T05:53:20.000Z", "arch": "x86_64", "commit": "f5544ad261119d4a87476031a5d9b9c06d206e8b", "fileid": "8a6c8fd8c20cffffb652a243e2ce88b93f1b2ed2b8ae55d9e964e0a224a938da", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/barbehenna/actions/runs/25982718610" }, { "r": "4.6.0", "os": "mac", "version": "1.0.2", "date": "2026-05-17T05:51:34.000Z", "arch": "aarch64", "commit": "f5544ad261119d4a87476031a5d9b9c06d206e8b", "fileid": "2e1e215eedf247753277474d697d0aaf962c861b4d7cb846bee0ac4bfcd55918", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/barbehenna/actions/runs/25982718610" }, { "r": "4.6.0", "os": "mac", "version": "1.0.2", "date": "2026-05-17T05:52:44.000Z", "arch": "x86_64", "commit": "f5544ad261119d4a87476031a5d9b9c06d206e8b", "fileid": "aadabaa05ee1f41b1f206b2682d0a552956e6a45626baf825cc93126bbaa81e8", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/barbehenna/actions/runs/25982718610" }, { "r": "4.7.0", "os": "win", "version": "1.0.2", "date": "2026-05-17T05:51:24.000Z", "arch": "x86_64", "commit": "f5544ad261119d4a87476031a5d9b9c06d206e8b", "fileid": "db6747124979d063a87345d5f2c497f9b410feb7bc22da81fb374c1f1a1f8b21", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/barbehenna/actions/runs/25982718610" }, { "r": "4.5.3", "os": "win", "version": "1.0.2", "date": "2026-05-17T05:51:26.000Z", "arch": "x86_64", "commit": "f5544ad261119d4a87476031a5d9b9c06d206e8b", "fileid": "bce84f6b5789d580183c696fb836c1dfb572d5d0ef411f3f3cb2dc3f7f6d3da4", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/barbehenna/actions/runs/25982718610" }, { "r": "4.6.0", "os": "win", "version": "1.0.2", "date": "2026-05-17T05:50:44.000Z", "arch": "x86_64", "commit": "f5544ad261119d4a87476031a5d9b9c06d206e8b", "fileid": "82f8040f76d00055463172707f1128969335b465b2b0993478f92fa3c7bd67b8", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/barbehenna/actions/runs/25982718610" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.2", "date": "2026-06-02T17:50:25.000Z", "arch": "emscripten", "commit": "f5544ad261119d4a87476031a5d9b9c06d206e8b", "fileid": "c58d572d0eac9855ea469f11f02806daa24f28942a114c13963b0546ec8028db", "status": "success", "buildurl": "https://github.com/r-universe/barbehenna/actions/runs/25982718610" } ] }